Insertion junction: CLIP2.072389_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.072389
Chromosome:chromosome 6
Location:4232343
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g278248 (1 of 41) PTHR32523//PTHR32523:SF8 - FAMILY NOT NAMED // PHYTOL KINASE 1, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGAAGGTCAACGAAATGATTCATTGAACACAGCAGAATGTGAGCACACG
Internal bar code:GGTACAGCTAAAAAGGGTAATT

Confirmation - LEAP-Seq

LEAP-Seq distance:972
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:AAGGGACAATGCGTGTTTGC
Suggested primer 2:TGGTTTAGTTTGGGCTGGCA