Insertion junction: CLIP2.072402_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.072402
Chromosome:chromosome 10
Location:4164966
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g449000 VPT1,LZY1 LZY1B homolog 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAATGTCCTTGCAACACTTGAAGTTATCTAGGCAGACGACGCCACAACCC
Internal bar code:AGGTGTCTTTCACAACTTCAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1335
LEAP-Seq percent confirming:98.2759
LEAP-Seq n confirming:57
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:58

Suggested primers for confirmation by PCR

Suggested primer 1:ATGCGTGACTGGAAGCTCAA
Suggested primer 2:GAGCACAACATAGCGCCATG