Insertion junction: CLIP2.072406_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.072406
Chromosome:chromosome 7
Location:3769943
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g338350 CPLD50 Conserved in the Plant Lineage and Diatoms; (1 of 1) PTHR10072//PTHR10072:SF43 - IRON-SULFUR CLUSTER ASSEMBLY PROTEIN // SUBFAMILY NOT NAMED 5'UTR
Cre07.g338400 (1 of 1) K14845 - RAT1-interacting protein (RAI1, DOM3Z) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGAACCACAGCCATACAGTAGTAAACACCCAGGCTTGTGGAGCTGTTCTA
Internal bar code:GAATCCGCGTTAAAGCGCAATT

Confirmation - LEAP-Seq

LEAP-Seq distance:2292
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CACCAGCTCTACAGGGTTGG
Suggested primer 2:TGCAAACCCCGTATGATGCT