Insertion junction: CLIP2.072420_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.072420
Chromosome:plastome
Location:60300
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802288 rps7,2716973,ChreCp024 30S ribosomal protein S7; (1 of 2) K02992 - small subunit ribosomal protein S7 (RP-S7, MRPS7, rpsG) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGGTTTACATACTCCGAAGTTTACTTGCCCGAAGGGGAAGGAGGAAGC
Internal bar code:GAATTACTGCTATGCGAGGGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:55
LEAP-Seq percent confirming:90.0
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:AGTTACCGCGCTTAAAGGCT
Suggested primer 2:TTGCCATTGCTAACGCCATG