Insertion junction: CLIP2.072440_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.072440
Chromosome:plastome
Location:204019
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802336 orf854 Wendy transposon CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTCTGTCGGAGCGGATGGAAAAAAAGGAGACACTTCGTAATGCGTTGAA
Internal bar code:AGCACATGTCGCGAAAGACAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:225
LEAP-Seq percent confirming:5.88235
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:48
LEAP-Seq n unique pos:51

Suggested primers for confirmation by PCR

Suggested primer 1:CTCTCCAACTTGGCGGCTAA
Suggested primer 2:AATCAGGTGGAAGCTTCCGG