Insertion junction: CLIP2.072467_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.072467
Chromosome:chromosome 17
Location:2563697
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g716050 (1 of 1) PTHR20953:SF2 - PROTEIN SEEDLING PLASTID DEVELOPMENT 1 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTACATCGAGATGAAAACCAGGCCAGGTCGTGTTGGGCGATCCCGCGCAA
Internal bar code:AGGATTTTGCTCGGCTGTTCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:4348
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:48
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:TCCTCATACTCGCGATTGCC
Suggested primer 2:GTGATGTGACCCCGTGGAAT