Insertion junction: CLIP2.072493_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.072493
Chromosome:plastome
Location:101747
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802308 ChreCp044,2716995,psbL photosystem II reaction center subunit XII; (1 of 1) K02713 - photosystem II PsbL protein (psbL) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAATATAGCCTGCCTTCGGCATCCCCTTACGGGATGCCAGTGGATATTTA
Internal bar code:TTCGGTGGCAGTTACAGTAGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:169
LEAP-Seq percent confirming:11.7647
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CGTTGGTTAGCTATCCACGGT
Suggested primer 2:TTACTTAGGACGGCAGTGGC