Insertion junction: CLIP2.072495_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.072495
Chromosome:plastome
Location:129434
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802318 ChreCp054,2716983,atpF ATP synthase CF0 B subunit; (1 of 1) PTHR34264:SF3 - ATP SYNTHASE SUBUNIT B, CHLOROPLASTIC 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACTGAAATTTAAGCTAAGTCAAATTTATTTTCTCACTTTCAAGGCTGCG
Internal bar code:TGCATCATCATCTTAGCACGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:614
LEAP-Seq percent confirming:54.5455
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:ACTGCCTTTGGTGCTTCCTT
Suggested primer 2:AGTAGTACCGCCACTGCCTA