Insertion junction: CLIP2.072553_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.072553
Chromosome:chromosome 14
Location:1476889
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g617350 (1 of 7) PF00415//PF13540 - Regulator of chromosome condensation (RCC1) repeat (RCC1) // Regulator of chromosome condensation (RCC1) repeat (RCC1_2) outside_mRNA
Cre14.g617400 HSP22F Heat shock protein 22F; (1 of 4) PTHR11527//PTHR11527:SF128 - SMALL HEAT-SHOCK PROTEIN HSP20 FAMILY // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAAGTGACCGTGGGTGAACTAATGAGTCCCTGAGCGCATGCTGGTTTGTA
Internal bar code:CTATCAAGTTTGCTATAATTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1607
LEAP-Seq percent confirming:81.0811
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:37

Suggested primers for confirmation by PCR

Suggested primer 1:ACATTCAACAGCCACGTTGC
Suggested primer 2:GTGCGAACGGGTTTTCCTTC