Insertion junction: CLIP2.072577_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.072577
Chromosome:chromosome 16
Location:4541165
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g671400 ARS1 (1 of 2) IPR000917//IPR012083//IPR017850 - Sulfatase // Arylsulfatase // Alkaline-phosphatase-like, core domain; Periplasmic arylsulfatase 1 5'UTR
Cre16.g671450 FAO12 FAD-dependent oxidoreductase; (1 of 1) PTHR13847//PTHR13847:SF150 - FAD NAD BINDING OXIDOREDUCTASES // OXIDOREDUCTASE TDA3-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCGCAGCGGCCATTCTTAGCATCGCGCGTTTTCATATGCGCTCTACGTA
Internal bar code:CTAAGGGGGTGCGTGTGGGGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:2349
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:42
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:49

Suggested primers for confirmation by PCR

Suggested primer 1:ACCTATCTGCCCTGAGAGCA
Suggested primer 2:CGCTTGCAACTCGACCAAAA