Insertion junction: CLIP2.072588_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.072588
Chromosome:chromosome 12
Location:4351007
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g519180 EFT1a,PSRP7,EFT1 Chloroplast elongation factor Ts-like protein; (1 of 1) K02357 - elongation factor Ts (tsf, TSFM) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTGAATCCTCGCCTCCCCAAGCGCCTCCCCTGATCCTCAGGGTACTCGG
Internal bar code:TGGGATAGCAACAGTCATAATT

Confirmation - LEAP-Seq

LEAP-Seq distance:1320
LEAP-Seq percent confirming:17.6471
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:GCCTCGGAGAAGTTCAACGA
Suggested primer 2:ACCGCACATGCTGTTAGGAA