Insertion junction: CLIP2.072631_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.072631
Chromosome:chromosome 9
Location:6332713
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g414200 VPS26 (1 of 1) K18466 - vacuolar protein sorting-associated protein 26 (VPS26); Subunit of Retromer complex 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGTATGAGGCCACGGGCTCAAGCGGGGAAACCAATCGTGTAGCGGGGGA
Internal bar code:CTCTGTCCAAGGAGGCAAAAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2061
LEAP-Seq percent confirming:97.0588
LEAP-Seq n confirming:66
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:68

Suggested primers for confirmation by PCR

Suggested primer 1:GTAGATAGCCTCAGCGCCTG
Suggested primer 2:CTCTAACGCTAGCTGGGAGC