Insertion junction: CLIP2.072663_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.072663
Chromosome:plastome
Location:92098
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802303 2717010,ChreCp039,rps9 30S ribosomal protein S9; (1 of 2) PTHR21569//PTHR21569:SF1 - RIBOSOMAL PROTEIN S9 // 28S RIBOSOMAL PROTEIN S9, MITOCHONDRIAL 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAGATTCCGAAAGAAGTTAATAAATTTGGACTGCTAACTATTACACTTC
Internal bar code:GTGCAAGGCGAGGATCACCCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:977
LEAP-Seq percent confirming:14.2857
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:36
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:AGTGGGGCGTCGTAAAGAAG
Suggested primer 2:CGTTGTGCATCAAGACCTTGT