Insertion junction: CLIP2.072664_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.072664
Chromosome:contig 42
Location:22109
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre42.g802227 (1 of 2) IPR001965//IPR011011//IPR012337//IPR013083//IPR019787 - Zinc finger, PHD-type // Zinc finger, FYVE/PHD-type // Ribonuclease H-like domain // Zinc finger, RING/FYVE/PHD-type // Zinc finger, PHD-finger 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACAGTACTAATCGAGCAAGGCTGCGGTGCAAGACTAGGACTGGCTGCCT
Internal bar code:AATAGGTGCGGTCATTTCATTC

Confirmation - LEAP-Seq

LEAP-Seq distance:2332
LEAP-Seq percent confirming:1.5873
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:62
LEAP-Seq n unique pos:63

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTGGGGTAGGGGAGAGAT
Suggested primer 2:TGGACAGCGAGGGTGATTTC