Insertion junction: CLIP2.072679_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.072679
Chromosome:plastome
Location:80269
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802297 psbB,2717002,ChreCp032 (1 of 1) K02704 - photosystem II CP47 chlorophyll apoprotein (psbB); photosystem II P680 chlorophyll A apoprotein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTATTGCTTCACACCACATCGCAGCTGGTATTTTAGGTGTTTTAGCAGG
Internal bar code:TGGTTGTCACGCTGGACTATGT

Confirmation - LEAP-Seq

LEAP-Seq distance:213
LEAP-Seq percent confirming:12.1212
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:87
LEAP-Seq n unique pos:99

Suggested primers for confirmation by PCR

Suggested primer 1:TGTTGGCATACGACGAACGA
Suggested primer 2:GTTGGGCAGGTTCTATGGCT