Insertion junction: CLIP2.072712_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.072712
Chromosome:chromosome 8
Location:1269116
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre08.g363800 (1 of 1) PTHR31996:SF2 - COILED-COIL DOMAIN-CONTAINING PROTEIN 115 5'UTR
Cre08.g363837 POLG1X,POL1A (1 of 1) IPR001098//IPR002298//IPR012337 - DNA-directed DNA polymerase, family A, palm domain // DNA polymerase A // Ribonuclease H-like domain; Putative DNA polymerase gamma, organellar 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACACCCATGGCAACCTATTGGCAATGATGACATCAGAAAAAGTTAAGTCG
Internal bar code:TGCGCTGGCGCTAGGGCGATCA

Confirmation - LEAP-Seq

LEAP-Seq distance:130
LEAP-Seq percent confirming:60.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:AACCCTGATCCAGATCCGGA
Suggested primer 2:TCATCGTTAGAGAGCGTGGC