Insertion junction: CLIP2.072725_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.072725
Chromosome:chromosome 7
Location:478904
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g315550 (1 of 2) IPR005654//IPR027417 - ATPase, AFG1-like // P-loop containing nucleoside triphosphate hydrolase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCTGTAAATAATTCATCAAGTTGCCCTCGCGTGCGTACTCGGGACACCG
Internal bar code:GAATGGTACGACCGTCTCAGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1687
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:TGTTGTCGTGCACATTGCTG
Suggested primer 2:AGTACCCAGCAGCATCCCTA