Insertion junction: CLIP2.072737_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.072737
Chromosome:chromosome 3
Location:7443938
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g205850 MAE6,MFT6 MATE efflux family protein; (1 of 3) PTHR11206//PTHR11206:SF95 - MULTIDRUG RESISTANCE PROTEIN // MULTI ANTIMICROBIAL EXTRUSION FAMILY PROTEIN 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGTTCATCAGTGTTCATCTTGTCTTAACATCGGTTTCCCGACTGTCCCC
Internal bar code:TTAGTTGTACGAATACTGATGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1734
LEAP-Seq percent confirming:98.3333
LEAP-Seq n confirming:59
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:60

Suggested primers for confirmation by PCR

Suggested primer 1:GCCGAGGATTGGACGTAGAG
Suggested primer 2:TTTTTCCGCCTGGCAAACTG