Insertion junction: CLIP2.072737_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.072737
Chromosome:chromosome 3
Location:7443939
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g205850 MAE6,MFT6 MATE efflux family protein; (1 of 3) PTHR11206//PTHR11206:SF95 - MULTIDRUG RESISTANCE PROTEIN // MULTI ANTIMICROBIAL EXTRUSION FAMILY PROTEIN 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGACAGGTGTGTGCGTCCATTATTGATGCCCGACTCTGCAGGTGCTATGC
Internal bar code:TTAGTTGTACGAATACTGATGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1692
LEAP-Seq percent confirming:96.7742
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:TTTTTCCGCCTGGCAAACTG
Suggested primer 2:GCCGAGGATTGGACGTAGAG