Insertion junction: CLIP2.072768_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.072768
Chromosome:plastome
Location:58800
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802287 ChreCp023,atpE,2716972 ATP synthase epsilon chain; (1 of 1) K02114 - F-type H+-transporting ATPase subunit epsilon (ATPF1E, atpC) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTATTTACCCAAAGAGTATACTGTTCAACTCTATCAGACTTGAATAGCT
Internal bar code:AGGAAGGGAAAGACCGTTAGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:99
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:ACACCAGAGCGTCCTTTCTG
Suggested primer 2:ACCACTCAGCCATCTCTCCT