Insertion junction: CLIP2.072800_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.072800
Chromosome:plastome
Location:199504
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802335 rpoC1,ChreCp069,2717049 (1 of 2) K03046 - DNA-directed RNA polymerase subunit beta' (rpoC); RNA polymerase beta' chain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTTGTATAAGCAATATTTAAAAAATTATTATGCACGTAAACCTAAAAAT
Internal bar code:CATAAATGGTTCTCACATGCCG

Confirmation - LEAP-Seq

LEAP-Seq distance:358
LEAP-Seq percent confirming:70.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:AATTGTGGTGAACGCAGTGA
Suggested primer 2:GCGGAAAGTCGTCAAACACA