Insertion junction: CLIP2.072863_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.072863
Chromosome:chromosome 1
Location:5512024
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g039150 PIC1,CPLD5,TIC21 Conserved in the plant lineage and diatoms 5; (1 of 2) PTHR33510:SF5 - PROTEIN TIC 20-V, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTAAGTGCTCCACAGCCTCCACTTCAAAGCGCAAGTACCGCGATCAAAG
Internal bar code:TAGATTGTTGAACTATTCGTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1460
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:ATGAGCCTGTACCACTCCCT
Suggested primer 2:GTTGTTTTGAACGTCGGGGG