Insertion junction: CLIP2.072905_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.072905
Chromosome:chromosome 3
Location:7262457
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g207502 (1 of 7) K18932 - palmitoyltransferase (ZDHHC) 3'UTR
Cre03.g207550 ADH8,CAD2 Cinnamyl-alcohol dehydrogenase; (1 of 2) 1.1.1.195 - Cinnamyl-alcohol dehydrogenase / CAD outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCAATTACGTGTAGCGGGTCAAGGCGCTGAAAGCAGAGGGGCCACGCCA
Internal bar code:TATAAAGAGTCGGGCCTGGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:3241
LEAP-Seq percent confirming:52.5
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:19
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:GGAATCCAGCCCCATTGTCA
Suggested primer 2:CCTGTAGCAGTGACGTTGGT