Insertion junction: CLIP2.072909_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.072909
Chromosome:plastome
Location:11707
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802267 ChreCp005,2716979,tufA elongation factor 1-alpha; (1 of 1) PTHR23115//PTHR23115:SF146 - TRANSLATION FACTOR // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGTGATCATGTTTTTAACGTAGTCAGCGTGACCTGGACAGTCTACGTGA
Internal bar code:AACGTTACTTCTGAAGAAAGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:182
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:AAAACTCCCGTTCCCCTTCG
Suggested primer 2:AGCAACAGTACCACGACCTG