Insertion junction: CLIP2.072988_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.072988
Chromosome:chromosome 11
Location:1546725
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g468450 CEN1,VFL2,DLE2 20 kD Calcium-Binding Protein Centrin (caltractin); (1 of 1) K16465 - centrin-1 (CETN1) 3'UTR
Cre11.g468500 MPA8 Metallophosphoesterase/metallo-dependent phosphatase; (1 of 1) PTHR22953//PTHR22953:SF46 - ACID PHOSPHATASE RELATED // INACTIVE PURPLE ACID PHOSPHATASE 2-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTACATTGATGCCCTGATCTTCTAGCTTTCGTCTTCAGGTACCAGGACG
Internal bar code:TGGAATTTCAGTATTTATTGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:846
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:ATGCCACGATGTTGGGGTAG
Suggested primer 2:CTGACTTGTCCACACGCTCT