Insertion junction: CLIP2.072994_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.072994
Chromosome:chromosome 3
Location:8923852
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g204689 PDE21 (1 of 17) 3.1.4.53 - 3',5'-cyclic-AMP phosphodiesterase / cAMP-specific phosphodiesterase; 3'%252C5'-cyclic-nucleotide phosphodiesterase 3'UTR
Cre03.g204801 (1 of 1) K10606 - E3 ubiquitin-protein ligase FANCL (FANCL, PHF9) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACATACACAAGCAAGCATGCATCCCATTGCGCACTGAACGCATGTGCTTA
Internal bar code:TTTGAGAGAAGTCCCACCTACA

Confirmation - LEAP-Seq

LEAP-Seq distance:4226
LEAP-Seq percent confirming:89.5238
LEAP-Seq n confirming:94
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:105

Suggested primers for confirmation by PCR

Suggested primer 1:TCGCCTGCCATACATGCTAG
Suggested primer 2:TGAAAGGGGCAGTCTTCGTC