Insertion junction: CLIP2.073053_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.073053
Chromosome:plastome
Location:50476
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802285 psbA,ChreCp021,2716969 (1 of 2) K02703 - photosystem II P680 reaction center D1 protein (psbA); photosystem II protein D1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGGCAGTTGGCAGGCAACTGCCTGCTTCCTCCTTCGGAGTATGTAAACA
Internal bar code:CCTTTTCACATCTGAGCGCATT

Confirmation - LEAP-Seq

LEAP-Seq distance:2018
LEAP-Seq percent confirming:5.06329
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:75
LEAP-Seq n unique pos:79

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCTACCAGGCTGTAAAGC
Suggested primer 2:ACCACCGAATACACCAGCAA