Insertion junction: CLIP2.073217_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.073217
Chromosome:chromosome 13
Location:2968529
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre13.g801540 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCACTGTTGCGCTGTCACTGCGGGAAAGTATGGGGATGGCTATGGGTTTC
Internal bar code:TTGAAATTATGCCTGTGTAGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2854
LEAP-Seq percent confirming:13.7931
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:25
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:CGCCTTGGGAACACACTTTG
Suggested primer 2:ATGTGACTGCTGTGTGGAGG