Insertion junction: CLIP2.073226_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.073226
Chromosome:chromosome 6
Location:6738181
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g295550 (1 of 1) IPR006045//IPR011051//IPR013096 - Cupin 1 // RmlC-like cupin domain // Cupin 2, conserved barrel 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGGCGGCGGCAGGTATGGTCATTGTGGCGTTGTGGCCATCAGCGGGTTC
Internal bar code:AGCGAGGTACACTACCAATCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1794
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:ATCACACAAGTCCGCACGAT
Suggested primer 2:TCATGCCCGTACCTCTCTCA