Insertion junction: CLIP2.073232_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.073232
Chromosome:chromosome 17
Location:526936
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g699350 SMM51 (1 of 13) PF12847 - Methyltransferase domain (Methyltransf_18); S-adenosyl-L-methionine-dependent methyltransferase 3'UTR
Cre17.g699400 (1 of 6) PTHR10994//PTHR10994:SF72 - RETICULON // SUBFAMILY NOT NAMED 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGACTGCGACAAGGCTACAAAGACGGTCGCCACAGGCACCAAGGCACGA
Internal bar code:ATAGTTGACATGACCGCTAGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:223
LEAP-Seq percent confirming:7.69231
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:CCTTGGTACTGCCTAGCTGG
Suggested primer 2:GTTGGCGTAAGGGTGAGGAA