Insertion junction: CLIP2.073321_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.073321
Chromosome:plastome
Location:76634
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802295 ChreCp030,psbN,2717031 photosystem II protein N; (1 of 1) K02715 - PsbN protein (psbN) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATAGCTCATTTAATAATAAAATTATTCTCTTTTCAACATATCTCTTAGA
Internal bar code:AACCGTGCAGGGCGGGCATCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:237
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:GTAGGCAGTCCCTTTTCCCC
Suggested primer 2:GTAAACCCCTTCCCCTTCGG