Insertion junction: CLIP2.073325_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.073325
Chromosome:plastome
Location:102245
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802308 ChreCp044,2716995,psbL photosystem II reaction center subunit XII; (1 of 1) K02713 - photosystem II PsbL protein (psbL) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAAATGTTATCCCCTTCCCCTTTGGGTAAATAAATTTTAGTGGAAGGTAC
Internal bar code:AGTGTTGAGTATCTGAAATAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:130
LEAP-Seq percent confirming:55.5556
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:ACCTGCAATCGTTACTGGAACT
Suggested primer 2:GCGGCTGTGGCTGTAGATAT