Insertion junction: CLIP2.073429_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.073429
Chromosome:plastome
Location:131822
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802319 2717001,ChreCp055,rps11 30S ribosomal protein S11; (1 of 1) IPR019981 - Ribosomal protein S11, bacterial-type 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATTGTAAATAGTTTTGGTAGATTTCTTGTAAAACCTCTTATAGAGAAAT
Internal bar code:CACTTCCTACCGTAATCGTATA

Confirmation - LEAP-Seq

LEAP-Seq distance:535
LEAP-Seq percent confirming:18.3333
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:49
LEAP-Seq n unique pos:60

Suggested primers for confirmation by PCR

Suggested primer 1:TAGCTGATAGGCGAGGCAAC
Suggested primer 2:CCAGCAGAGCTCCAGCATAA