Insertion junction: CLIP2.073500_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.073500
Chromosome:chromosome 3
Location:4394957
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g175000 RPH3,RNPH3 3'-5' Exoribonuclease PH component of the Exosome; (1 of 1) PTHR11097:SF14 - EXOSOME COMPLEX COMPONENT RRP45 3'UTR
Cre03.g175050 TRP13 Transient receptor potential ion channel protein; (1 of 6) PTHR10117 - TRANSIENT RECEPTOR POTENTIAL CHANNEL 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCTGGCATGTCAGCCGACTTTACAACAGCTGAACAGTGTTGGCCATGC
Internal bar code:GTCTCCATGGATATTATGTTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2019
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:110
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:110

Suggested primers for confirmation by PCR

Suggested primer 1:AAGAGGAGGAGGAGGAGCAG
Suggested primer 2:AACGTGCTGGTCTGAGGATG