Insertion junction: CLIP2.073509_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.073509
Chromosome:chromosome 14
Location:213697
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g609010 5'UTR
Cre14.g609030 (1 of 3) 3.5.5.1 - Nitrilase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAGCCTTTAACTCTTGGCGCAACACTGTGTCTACATATTTGCAAATCCT
Internal bar code:GGATCTCATTGTCCCTCCTCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:286
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:ACCTTCGCATCACTGACTGG
Suggested primer 2:CACTCCCACCAACCCATACC