Insertion junction: CLIP2.073537_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.073537
Chromosome:chromosome 12
Location:5181246
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g527000 CDPK14 (1 of 1) PF07714//PF13202//PF13833 - Protein tyrosine kinase (Pkinase_Tyr) // EF hand (EF-hand_5) // EF-hand domain pair (EF-hand_8); Calcium/calmodulin-dependent protein kinase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCAGATACACGGCCAGCTCGTAGGCCTCGACTATTTTCCGGGCAAAGAG
Internal bar code:GGAGTATAATTATGGACTGGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1399
LEAP-Seq percent confirming:91.6667
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:CTCAAACACGTCCTCCAGCT
Suggested primer 2:AAATGGTCAGAGGTCAGGCG