Insertion junction: CLIP2.073578_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.073578
Chromosome:plastome
Location:75704
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802294 ChreCp029,psbH,2717030 photosystem II reaction center protein H; (1 of 1) K02709 - photosystem II PsbH protein (psbH) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTTGAGTTGCTTAGTTTACCTTAGCGAAAAGAAGACTTAGCAGCTAGC
Internal bar code:GGCAGAATGGCGATTGATATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:84
LEAP-Seq percent confirming:4.7619
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:40
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:GGGGAAAAGGGACTGCCTAC
Suggested primer 2:GAATCCGCGTTTTCTCCGTG