Insertion junction: CLIP2.073582_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.073582
Chromosome:chromosome 14
Location:458430
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g610801 5'UTR
lncRNA_TCONS_00189579 5'UTR
lncRNA_TCONS_00189580 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGAGTATTGCCGTCCCGTTAATATTAACGCGTGTAAGCACGCACTTGT
Internal bar code:ACCCTGGTTTCGGCCACGTCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:531
LEAP-Seq percent confirming:3.27869
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:59
LEAP-Seq n unique pos:61

Suggested primers for confirmation by PCR

Suggested primer 1:TGGGGTCTGGCACTTTGTTT
Suggested primer 2:ACGTCGTCCGCTTTGTAGTT