Insertion junction: CLIP2.073613_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.073613
Chromosome:plastome
Location:203893
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802336 orf854 Wendy transposon CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCAATCAGGATCAAAAAGAAACGGAAAATAGTTATTTTAATAACTTAAC
Internal bar code:TCTCCGCTACGTGCTCGCATAC

Confirmation - LEAP-Seq

LEAP-Seq distance:363
LEAP-Seq percent confirming:31.0345
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:20
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:CTCTCCAACTTGGCGGCTAA
Suggested primer 2:AATCAGGTGGAAGCTTCCGG