Insertion junction: CLIP2.073655_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.073655
Chromosome:chromosome 3
Location:1171161
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g149300 (1 of 1) 2.8.4.5 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase / Methylthio-threonylcarbamoyl-adenosine transferase B 3'UTR
Cre03.g149350 RWP4 (1 of 16) PF02042 - RWP-RK domain (RWP-RK); RWP-RK transcription factor 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGGAATAATTGTCACAAAGTCACCAATACGTGAGACGTGAGTGAGTGAA
Internal bar code:TTTAAATTGTATACGGAATGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1009
LEAP-Seq percent confirming:3.0303
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:32
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:ATCTGCAACACCCCCATCAG
Suggested primer 2:CTGTTGAACGGTTGGCTTGG