Insertion junction: CLIP2.073683_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.073683
Chromosome:chromosome 16
Location:5695386
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre16.g680900 RPB1 (1 of 1) K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A); DNA-directed RNA polymerase II, largest subunit intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTCCACTCAGCTCAAACATTATCAACAAACTACTTACGTGTGCGTTTGC
Internal bar code:GATTACTAAACGATAATTCGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:393
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCAACGCTCTGTCTGGTT
Suggested primer 2:GAGGAGGGGGAGAGGAACAT