Insertion junction: CLIP2.073702_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.073702
Chromosome:plastome
Location:80281
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802297 psbB,2717002,ChreCp032 (1 of 1) K02704 - photosystem II CP47 chlorophyll apoprotein (psbB); photosystem II P680 chlorophyll A apoprotein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGTCAAAACCATCAGCACCCCAAGAAGGAGCTACTGGTTGAACGCTAC
Internal bar code:GTGCAGGTGCGGCCGGTTGTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:673
LEAP-Seq percent confirming:64.8649
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:37

Suggested primers for confirmation by PCR

Suggested primer 1:GTTGGGCAGGTTCTATGGCT
Suggested primer 2:TGTTGGCATACGACGAACGA