Insertion junction: CLIP2.073708_3

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.073708
Chromosome:plastome
Location:11785
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802267 ChreCp005,2716979,tufA elongation factor 1-alpha; (1 of 1) PTHR23115//PTHR23115:SF146 - TRANSLATION FACTOR // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAATGTGTTCTTTTGTTTGTGGCATAGGACCGTCAGCACCTGATACTACT
Internal bar code:ATCACTTTATGTTATTTTTACC

Confirmation - LEAP-Seq

LEAP-Seq distance:385
LEAP-Seq percent confirming:14.2857
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:TGTCACGTGCTAAGTTTGAACG
Suggested primer 2:AGCAACAGTACCACGACCTG