Insertion junction: CLIP2.073727_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.073727
Chromosome:chromosome 2
Location:2911476
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g095050 (1 of 77) IPR012340 - Nucleic acid-binding, OB-fold 3'UTR
Cre02.g095100 CPLD26,PPO2 (1 of 1) PTHR10851//PTHR10851:SF3 - PYRIDOXINE-5-PHOSPHATE OXIDASE // SUBFAMILY NOT NAMED; conserved expressed protein related to pyridoxamine 5' phosphate oxidase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATGTGTGCAAATACTCAGTACTAATTATAACCCGACGTGACAATTTGCG
Internal bar code:CTAGGAATCCGTGTGAATTAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:3016
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:45
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:45

Suggested primers for confirmation by PCR

Suggested primer 1:GCCCATGCATCCACGGTATA
Suggested primer 2:CGGTCAGCTTCTGGAAAGGT