Insertion junction: CLIP2.073727_3

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.073727
Chromosome:plastome
Location:8721
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802265 ChreCp003,2716966,chlB (1 of 1) K04039 - light-independent protochlorophyllide reductase subunit B (chlB); light-independent protochlorophyllide reductase subunit B CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGACGGCTACAGTGCAGGAGCCATCAAAATTTATTTACCCGAAGGCGAC
Internal bar code:GATCCGATATTCGCCAGGCCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:79
LEAP-Seq percent confirming:13.3333
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:GTCCCAAAAATGGCTGCAGG
Suggested primer 2:TAGCCCGTCTAGCAAGTTGC