Insertion junction: CLIP2.073816_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.073816
Chromosome:chromosome 12
Location:4777428
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g523250 MAE15 (1 of 11) K03327 - multidrug resistance protein, MATE family (TC.MATE, SLC47A, norM, mdtK, dinF); MATE efflux family protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAAGAGGGCACCTGGCCGTCGGAAGTGGTCATCAGAATAACACAGCATGT
Internal bar code:GACGCAAGAAGCTTGTGGATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1116
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:TGAGGGGCCCATAGCTAAGT
Suggested primer 2:GGATACCCACCTGGATGCTG