Insertion junction: CLIP2.073827_4

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.073827
Chromosome:chromosome 2
Location:8468943
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g142100 5'UTR
Cre02.g142150 (1 of 1) PF14770 - Transmembrane protein 18 (TMEM18) 3'UTR
lncRNA_TCONS_00137062 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCTTAAAGATTGTAACGGTGCTGGACCAAGCCTGAAAAGATGAGGCGAA
Internal bar code:CTTTGAAACTGGTGAATCTTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1156
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:47
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:47

Suggested primers for confirmation by PCR

Suggested primer 1:GTACACACACACGCACACAC
Suggested primer 2:CTACCTCATCAGCTGCTCGG