Insertion junction: CLIP2.073876_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.073876
Chromosome:plastome
Location:129448
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802318 ChreCp054,2716983,atpF ATP synthase CF0 B subunit; (1 of 1) PTHR34264:SF3 - ATP SYNTHASE SUBUNIT B, CHLOROPLASTIC 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAAAAACGCTCAGTTTTTATTTACTTACTTTCGAAGTTGCAAAGGAGTGA
Internal bar code:AGCTTTTCCAAAACTTGGAACT

Confirmation - LEAP-Seq

LEAP-Seq distance:73
LEAP-Seq percent confirming:10.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:AGTAGTACCGCCACTGCCTA
Suggested primer 2:ACTGCCTTTGGTGCTTCCTT