Insertion junction: CLIP2.074026_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.074026
Chromosome:chromosome 13
Location:2782861
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre13.g582476 (1 of 1) K01112 - phosphohistidine phosphatase (PHPT1) 3'UTR
Cre13.g801538 (1 of 73) IPR000477//IPR005135 - Reverse transcriptase domain // Endonuclease/exonuclease/phosphatase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTGCATGAACTGTTTTTCTTTTTGAATAATCCTTTTGAGACTAGTTTTG
Internal bar code:TATGCGGGGACCAAGAGTTCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:786
LEAP-Seq percent confirming:60.8696
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:GTTGACTCCGGAGCAAGTGA
Suggested primer 2:ATCGAGCACTAGAGCATGGC