Insertion junction: CLIP2.074057_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.074057
Chromosome:chromosome 6
Location:2388720
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre06.g268501 (1 of 3) PF13563 - 2'-5' RNA ligase superfamily (2_5_RNA_ligase2) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAATTGCAGTGTCGCTTGGCGAGCGGGACAGAGCTTTCGAAAGGTGCCGC
Internal bar code:CGGTAGCCTACGGGAGGGTTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1269
LEAP-Seq percent confirming:20.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:GCCTCAAATGAATCGTCGGC
Suggested primer 2:CCACTCCTACCTTTGCAGCA